Outputs from the input examples

Glycine in water - minimal input     View input
Glycine in water - restart from checkpoint file     View input
Ethanol in ethanol (neat liquid)     View input
Grand-canonical ensemble     View input
Constant pressure ensemble     View input
Dimethylphosphate-Sodium complex with freely moving sodium     View input
Torsion angle sampling     View input
Potential of mean force between Me2PO4- and Na+ ions with adaptive umbrella sampling     View input
Creation/annihilation polynomial path thermodynamic integration     View input
Finite difference thermodynamic integration     View input
Widom insertion method     View input
Proximity analysis, trajectory filtering     View input
Conformation filtering     View input
Generic site calculation     View input
Primary hydration shell calculation     View input