Grand Canonical Ensemble Monte Carlo Simulation
of the dCpG/Proflavine Crystal Hydrate.
Abstract:
The grand canonical ensemble Monte Carlo molecular simulation method
is used to investogate hydration patterns in the crystal hydrate structure
of the dCpG/proflavine intercaleted complex.
The objective of this study is to show by example that the
recently 1advocated grand canonical ensemble simulation is a computationally
efficient method for determining the positions
of the hydrating water molecules in protein and nucleic acid structures.
A detailed molecular simulation convergence analysis and an analogous
comparison of the theoretiacl results with experiments clearly show
that the grad ensemble simulation can be far more advantageous than the
comparable canonicak ensemble simulations.