Evaluation of the Adaptive Umbrella Sampling Method
Abstract:
The adaptive umbrella sampling technique, introduced recently to
improve the probability ratio method and found to perform more
reliably then the customary harmonic umbrella sampling, is tested
and compared with other free energy methods. One of the tests
applies the method to a transition involving a chemical change:
calculation of the hydration free energy difference between
acetone and dimethylamine and the other test calculates the
conformatonal free energy difference between the
C7 and
aR conformations of the
alanine dipeptide. The dipeptide problem is also treated by two
types of thermodynamic integrations and by the perturbation
method. The result for the acetone - dimethylamine problem is
compared with previous calculations on the same system using the
perturbation method, overlap ratio method and finite difference
thermodynamic integration. Enhancements to the adaptive umbrella
sampling method are also presented.