Conformational stability of the dimethylphosphate anion in water: Liquid state free energy simulations
Abstract: The relative free energies of hydration of dimethylphosphate anion in gauche-gauche, gauche-trans, and trans-trans conformations of phosphodiester torsion angles, computed with Monte Carlo method in the (T,V,N) ensemble at 25oC, are reported. The free energy differences are determined by the probability ration method using both umbrella sampling with harmonic weighting functions and adaptive umbrella sampling technique. The results indicate a stability trend of gg > gt > tt for the phosphodiester torsions in aqueous solutions. The magnitude of conformational differences indicates the extended gt and tt conformations to be thermally accessible to some extent at ambient temperatures. Conclusions of the present study are in agreement with the IR and Raman inferences and 13P NMR investigations. Methodologically, the performance of the free energy simulations through probability ratio method along with the adaptive umbrella sampling technique is tested in a three-legged thermocycle and found to converge in a satisfactory manner.