Tools for characterizing proteins: circular variance, mutual proximity,
chameleon sequences and subsequence propensities
Abstract:
For the characterization of various aspects of protein structures,
four useful concepts are discussed: chameleon sequences,
circular variance, mutual proximity and a subsequence-based foldability score.
These concepts were used in estimating foldability of globular,
intrinsically disordered and fold-switching proteins, properties of
protein-protein interfaces, quantifying sphericity,
helping to improve protein-protein docking scores, and
estimating the effect of mutations on stability.
A conjecture about the Achilles' heel of proteins is presented as well.