Human Uroporphyrinogen III Synthase: High Affinity Purification, NMR Resonance Assignments and Mapping of the Active Site NMR Studies Did Not Support a Heme Enzyme Complex.
Uroporphyrinogen-III-synthase (URO-synthase) catalyzes the cyclization and D-ring isomerization of hydroxymethylbilane (HMB) to uroporphyrinogen (URO'gen) III, the cyclic tetrapyrrole and physiologic percursor of heme. The deficient activity of human URO-synthase results in the autosomal recessive cutaneous disorder, congenital erythropoietic porphyria. Previously, the crystal structure of human URO-synthase was determined. To characterize the active site of human URO-synthase and its possible interaction in a cytosolic complex with hydroxymethylbilane-synthase (HMB-synthase) or uroporphyrinogen-decarboxylase (URO-decarboxylase) by NMR, the three recombinant human enzymes were expressed and purified to homogeneity in high yield. Using an 800 MHz instrument with a cryoprobe, assignment of the URO-synthase backbone 13C resonances (100%), backbone 1HN resonances (99.6%), non-proline backbone 1HN and 15N resonances (94%), and side-chain 13C and 1HN resonances (85%) was achieved. The absence of chemical shift changes in the 15N spectrum of URO-synthase mixed with the homogeneous HMB-synthase apoenzyme or URO-decarboxylase precluded a stable cytosolic enzyme complex. In silico docking of the URO-synthase crystal structure with an inhibitor, ND-methyl-1-formylbilane, and the product, URO'gen III, localized the enzyme's putative active site to the cleft between the enzyme's two major domains. NMR analyses of URO-synthase titrated with ND-methyl-1-formylbilane, or URO'gen III revealed resonance perturbations of specific residues lining the cleft, confirming the in silico docking localization of the active site. These NMR studies provide the resonance assignments for human URO-synthase, exclude the interaction of the enzyme with HMB-synthase or URO-decarboxylase in a cytosolic complex, and identify the location of the enzyme's active site.