Solvent effect on the conformation of the Hoechst 33258 agent
Abstract:
The conformational preferences of the Hoechst 33258
agent were studied with ab initio, semiempirical molecular
orbital, electrostatic calculations and by
Monte Carlo free energy simulations with
explicit solvent representation using the adaptive umbrella
sampling method. The semiempirical approach to calculating the
solvation free energies was found in qualitative agreement with
the Monte Carlo result. The optimal conformation in the solvent
was found to be close to the previously calculated optimal
conformation for binding